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AgBM-DTALite: An integrated modelling system of agent-based travel behaviour and transportation network dynamics
Published on: 2018
Published by: TRAVEL BEHAVIOUR AND SOCIETY
Sponsored by: United States Department of Energy (DOE) United States National Science Foundation (NSF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts
Authored by: Lei Zhang, Chenfeng Xiong, Xuesong Zhou
Tags

Agent-based model Learning Integrated model travel behaviour Choice Transportation system Traffic simulation

Direction-dependent interaction rules enrich pattern formation in an individual-based model of collective behavior
Published on: 2018
Published by: PLOS ONE
Sponsored by: National Science and Engineering Research Council of Canada (NSERC)
Platforms: MATLAB
Related Files: Code: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Cole Zmurchok, Vries Gerda de
Tags

Simulation Dynamics Animal groups Fish schools Motion Aggregations Communication mechanisms Hyperbolic model

Reactions, diffusion, and volume exclusion in a conserved system of interacting particles
Published on: 2018
Published by: PHYSICAL REVIEW E
Sponsored by: United Kingdom Engineering and Physical Sciences Research Council (EPSRC)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Helen Byrne, Daniel B Wilson, Maria Bruna
Tags

Simulation Model Mechanisms Physics Macrophages Cell-migration

Streamlining Simulation Experiments with Agent-Based Models in Demography
Published on: 2018
Published by: J ARTIFICIAL SOC SOC
Sponsored by: German Research Foundation (Deutsche Forschungsgemeinschaft, DFG) European Research Council (ERC) United Kingdom Engineering and Physical Sciences Research Council (EPSRC)
Platforms: Java ML3
Related Files: Paper:
Documentation: Other Narrative Pseudocode
Authored by: Jakub Bijak, Oliver Reinhardt, Jason D Hilton, Tom Warnke, Adelinde M Uhrmacher
Tags

Agent-based modeling Migration behavior networks Optimization Demography Decision-Making population meta-modeling Science Choice Wedding-ring Output Social-interaction Simulation experimentation

Statistically testing the role of individual learning and decision-making in trapline foraging
Published on: 2018
Published by: BEHAV ECOL
Sponsored by: United States National Science Foundation (NSF)
Platforms: NetLogo
Related Files: Code: Paper:
Documentation: Other Narrative
Authored by: Carolyn A Ayers, Paul R Armsworth, Berry J Brosi
Tags

Individual-based model behavior movement Spatially explicit patterns resource Random-walk Interspecific competition Bees Null models Bombus Forager movement Hypothesis testing Null model Traplining Bumblebees bombus-impatiens

IPA (v1): a framework for agent-based modelling of soil water movement
Published on: 2018
Published by: GEOSCIENTIFIC MODEL DEVELOPMENT
Sponsored by: German Research Foundation (Deutsche Forschungsgemeinschaft, DFG)
Platforms: GAMA
Related Files: Code: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Benjamin Mewes, Andreas H Schumann
Tags

Simulation Hydrology runoff Cellular-automata model Flow

Division of Labor during Biofilm Matrix Production
Published on: 2018
Published by: CURRENT BIOLOGY
Sponsored by: Danish National Research Foundation (DNSF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Knut Drescher, Anna Dragos, Heiko Kiesewalter, Marivic Martin, Chih-Yu Hsu, Raimo Hartmann, Tobias Wechsler, Carsten Eriksen, Susanne Brix, Nicola Stanley-Wall, Rolf Kuemmerli, Akos T Kovacs
Tags

Cooperation Specialization microorganisms Gene-expression Bistability Protein Social evolution Motility Promotes Bacillus-subtilis Bacillus-subtilis biofilms Kin discrimination Amyloid fibers

Analysis of Cell Size Homeostasis at the Single-Cell and Population Level
Published on: 2018
Published by: FRONTIERS IN PHYSICS
Sponsored by: United Kingdom Engineering and Physical Sciences Research Council (EPSRC)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Philipp Thomas
Tags

power laws Dynamics Distributions bacteria growth Mathematical-model Escherichia-coli Homeostasis Stochastic individual-based modeling Cell size control Size distributions Lineages Division cycle

Evaluation of the effect of chickenpox vaccination on shingles epidemiology using agent-based modeling
Published on: 2018
Published by: PEERJ
Sponsored by: Unknown
Platforms: AnyLogic
Related Files: Code: Paper:
Documentation: Other Narrative Flow charts
Authored by: Nathaniel D Osgood, Alexander Doroshenko, Weicheng Qian, Ellen Rafferty, Wade McDonald
Tags

Agent-based modeling Epidemiology Infection Health Policy long-term Vaccination immunization Impact Canada Hypothesis Chickenpox Contact Shingles Varicella-zoster-virus Herpes-zoster Force

Estimation of agent-based models using sequential Monte Carlo methods
Published on: 2018
Published by: JOURNAL OF ECONOMIC DYNAMICS & CONTROL
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Thomas Lux
Tags

Agent-based models Market Volatility Heterogeneous agents Prices Particle State-space models Estimation Markov chain monte carlo Particle filter Maximum-likelihood