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Population persistence in landscapes fragmented by roads: Disentangling isolation, mortality, and the effect of dispersal
Published on: 2018
Published by: ECOLOGICAL MODELLING
Sponsored by: German Research Foundation (Deutsche Forschungsgemeinschaft, DFG)
Platforms: C++
Related Files: Code: Paper:
Documentation: ODD Flow charts
Authored by: Ana Ceia-Hasse, Laetitia M Navarro, Luis Borda-de-Agua, Henrique M Pereira
Tags

Individual-based model behavior connectivity models Dynamics Roads Mortality Mechanisms Protocol Future Extinction Forest Abundance Avoidance Barrier effect

TALENT VERSUS LUCK: THE ROLE OF RANDOMNESS IN SUCCESS AND FAILURE
Published on: 2018
Published by: ADVANCES IN COMPLEX SYSTEMS
Sponsored by: Unknown
Platforms: NetLogo
Related Files: Code: Paper:
Documentation: Other Narrative
Authored by: Alessandro Pluchino, Andrea Rapisarda, Alessio Emanuele Biondo
Tags

Agent-based models models law money Wealth distribution Science Success Strategies Statistical-mechanics Advantage Talent Luck Serendipity Saving propensity

Logistical constraints lead to an intermediate optimum in outbreak response vaccination
Published on: 2018
Published by: PLOS COMPUTATIONAL BIOLOGY
Sponsored by: United States National Institutes of Health (NIH) United States National Science Foundation (NSF)
Platforms: Unknown
Related Files: Paper:
Documentation: ODD Mathematical description
Authored by: Katriona Shea, Yun Tao, Matthew Ferrari
Tags

Agent-based models Dynamics intervention Strategies Mouth-disease Measles epidemics Foot House-to-house Mass vaccination Smallpox attack

An individual-based model of skipjack tuna (Katsuwonus pelamis) movement in the tropical Pacific ocean
Published on: 2018
Published by: PROG OCEANOGR
Sponsored by: European Union European Research Council (ERC) Australian Research Council (ARC) United Kingdom Engineering and Physical Sciences Research Council (EPSRC)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Patrick Lehodey, Sebille Erik van, Joe Scutt Phillips, Gupta Alex Sen, Inna Senina, Michael Lange, John Hampton, Simon Nicol
Tags

behavior Animal behavior population Ecosystem fisheries Dynamics model Tracking Indian-ocean Western Yellowfin tuna Thunnus-obesus Hidden markov-models Advection-diffusion Genetic-analysis Western pacific Yellowfin tuna

Self-organizing moral systems: Beyond social contract theory
Published on: 2018
Published by: POLITICS PHILOSOPHY & ECONOMICS
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Gerald Gaus
Tags

self-organization Diversity Spontaneous order Social morality Social contract Public reason Bargaining problem Liberalism Reason

Harnessing advances in computer simulation to inform policy and planning to reduce alcohol-related harms
Published on: 2018
Published by: INT J PUBLIC HEALTH
Sponsored by: Australian National Health and Medical Research Council (NHMRC)
Platforms: AnyLogic
Related Files: Paper:
Documentation: Other Narrative Flow charts
Authored by: Michael Livingston, Jo-An Atkinson, Ante Prodan, Dylan Knowles, Eloise O'Donnell, Robin Room, Devon Indig, Geoff McDonnell, John Wiggers, Sandra Jones, Paul S Haber, David Muscatello, Nadine Ezard, Nghi Phung, Louise Freebairn, Lucie Rychetnik, Jaithri Ananthapavan, Sonia Wutzke, Modelling Consortium Alcohol
Tags

Agent-based modelling Alcohol-related harm Prevention policy Evidence synthesis

Carbon limitation drives GC content evolution of a marine bacterium in an individual-based genome-scale model
Published on: 2018
Published by: ISME JOURNAL
Sponsored by: Chinese National Natural Science Foundation United States National Science Foundation (NSF) Council of Hong Kong
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Ferdi L Hellweger, Yongjie Huang, Haiwei Luo
Tags

Populations Mutations Ocean Biogeographic patterns Lakes Prochlorococcus Likelihood Lineages Clade

A multi-scaled agent-based model of residential segregation applied to a real metropolitan area
Published on: 2018
Published by: COMPUTERS ENVIRONMENT AND URBAN SYSTEMS
Sponsored by: Royal Society of New Zealand Marsden Fund
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: David O'Sullivan, Peter Davis, Babak Mahdavi Adrestani
Tags

Agent-based modelling Simulation Dynamics Validation systems residential segregation Neighborhood racial segregation Ethnic-preferences Multi-scaled modelling Complex urban system Plurality index Housing vacancy dynamics

Small contribution of gold mines to the ongoing tuberculosis epidemic in South Africa: a modeling-based study
Published on: 2018
Published by: BMC MEDICINE
Sponsored by: Bill and Melinda Gates Foundation
Platforms: C++ EMOD
Related Files: Code: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Philip A Eckhoff, Richard G White, Bradley G Wagner, Stewart T Chang, Violet N Chihota, Katherine L Fielding, Alison D Grant, Rein M Houben, Gavin J Churchyard
Tags

HIV tuberculosis Community South Africa transmission hotspots Mycobacterium-tuberculosis Mathematical-models Hiv-infection Molecular epidemiology Mining Risk groups Global health Isoniazid preventive therapy Antiretroviral therapy High prevalence Cape-town

Modelling southern elephant seals Mirounga leonina using an individual-based model coupled with a dynamic energy budget
Published on: 2018
Published by: PLOS ONE
Sponsored by: Unknown
Platforms: NetLogo
Related Files: Code: Paper:
Documentation: ODD Flow charts Mathematical description
Authored by: Clive R McMahon, Merel Goedegebuure, Jessica Melbourne-Thomas, Stuart P Corney, Mark A Hindell
Tags

Complexity behavior Conservation Population-growth Survival Marine ecosystem models Macquarie-island Matrix models Hot-iron Restriction