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The predictive potential of early life stage individual-based models (IBMs): an example for Atlantic cod Gadus morhua in the North Sea
Published on: 2015
Published by: MARINE ECOLOGY PROGRESS SERIES
Sponsored by: European Union Norwegian Research Council (NRF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: Ute Daewel, Corinna Schrum, Alok Kumar Gupta
Tags

Recruitment Climate-change Population-dynamics Fish Ecosystem model Larval Environmental variability Baltic sea Spawning stock Heat-content

An agent-based modeling approach to represent infestation dynamics of the emerald ash borer beetle
Published on: 2015
Published by: ECOL INFORM
Sponsored by: Natural Sciences and Engineering Research Council (NSERC) of Canada Graduate Scholarship Discovery Grant
Platforms: Repast Java
Related Files: Paper:
Documentation: ODD Flow charts Mathematical description
Authored by: Taylor M Anderson, Suzana Dragicevic
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Simulation Dispersal population attraction Spread Agrilus-planipennis coleoptera North-america Fraxinus spp. Buprestidae Fairmaire

Local Variability Mediates Vulnerability of Trout Populations to Land Use and Climate Change
Published on: 2015
Published by: PLOS ONE
Sponsored by: United States Geological Survey (USGS) U.S. Environmental Protection Agency's Science to Achieve Results (STAR) U.S. Department of Agriculture Forest Service American Fisheries Society Rangeland Ecosystem Science Center
Platforms: inSTREAM
Related Files: Code: Paper:
Documentation: Other Narrative Flow charts
Authored by: Steven F Railsback, Jason B Dunham, Brooke E Penaluna, Ivan Arismendi, Sherri L Johnson, Robert E Bilby, Mohammad Safeeq, Arne E Skaugset
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models United-states Responses Change impacts Cutthroat trout British-columbia Long-term trends Stream temperatures Species abundance Forest harvest

The role of the geophysical template and environmental regimes in controlling stream-living trout populations
Published on: 2015
Published by: CAN J FISH AQUAT SCI
Sponsored by: United States Geological Survey (USGS) U.S. Environmental Protection Agency's Science to Achieve Results (STAR) American Fisheries Society Watersheds Research Cooperative
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Steven F Railsback, Jason B Dunham, Brooke E Penaluna, Robert E Bilby, Arne E Skaugset, Sherri Johnson
Tags

individual-based models ecosystems landscape ecology habitat Fish Cutthroat trout River continuum concept Thermal requirements Pacific-northwest Salmonids

Selection on a Genetic Polymorphism Counteracts Ecological Speciation in a Stick Insect
Published on: 2015
Published by: CURRENT BIOLOGY
Sponsored by: Swiss National Science Foundation (SNSF) National Science and Engineering Research Council of Canada (NSERC) European Research Council (ERC) Human Frontier Science Program
Platforms: gemma
Related Files: Paper:
Documentation: Other Narrative
Authored by: Samuel M Flaxman, Patrik Nosil, Aaron A Comeault, Ruediger Riesch, Emma Curran, Victor Soria-Carrasco, Zachariah Gompert, Timothy E Farkas, Moritz Muschick, Thomas L Parchman, Tanja Schwander, Jon Slate
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Adaptation Evolution Predation Populations Consequences Natural-selection Divergence Flow Reproductive isolation Genome

A Model of Genome Size Evolution for Prokaryotes in Stable and Fluctuating Environments
Published on: 2015
Published by: GENOME BIOLOGY AND EVOLUTION
Sponsored by: United Kingdom Natural Environment Research Council (NERC)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Piotr Bentkowski, Oosterhout Cock Van, Thomas Mock
Tags

ecology Modularity architecture In-vivo Biology Persistence Islands Bacterial genomes Prochlorococcus Transients

Multi-scale modelling of the dynamics of cell colonies: insights into cell-adhesion forces and cancer invasion from in silico simulations
Published on: 2015
Published by: JOURNAL OF THE ROYAL SOCIETY INTERFACE
Sponsored by: European Research Council (ERC)
Platforms: MATLAB
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Daniela K Schlueter, Ignacio Ramis-Conde, Mark A J Chaplain
Tags

morphogenesis Tumor-growth Complex E-cadherin Vitro

Effects of Spatial Extent on Modeled Relations between Habitat and Anadromous Salmonid Spawning Success
Published on: 2015
Published by: T AM FISH SOC
Sponsored by: U.S. Fish and Wildlife Service
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Steven F Railsback, Bret C Harvey, Jason L White
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Individual-based model Decisions Populations Rules Space Fish Instream flow Phabsim Lost

Timing and severity of immunizing diseases in rabbits is controlled by seasonal matching of host and pathogen dynamics
Published on: 2015
Published by: JOURNAL OF THE ROYAL SOCIETY INTERFACE
Sponsored by: Australian Research Council (ARC) United States National Science Foundation (NSF)
Platforms: VORTEX
Related Files: Paper:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: Konstans Wells, Barry W Brook, Robert C Lacy, Greg J Mutze, David E Peacock, Ron G Sinclair, Nina Schwensow, Phillip Cassey, Robert B O'Hara, Damien A Fordham
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Infectious-diseases Population-dynamics Approximate bayesian computation Biological-control Hemorrhagic-disease Oryctolagus-cuniculus Maternal antibodies European rabbit Myxoma virus Wild rabbits

Modeling larval connectivity of the Atlantic surfclams within the Middle Atlantic Bight: Model development, larval dispersal and metapopulation connectivity
Published on: 2015
Published by: ESTUARINE COASTAL AND SHELF SCIENCE
Sponsored by: United States National Science Foundation (NSF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Xinzhong Zhang, Dale Haidvogel, Daphne Munroe, Eric N Powell, John Klinck, Roger Mann, Frederic S Castruccio
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Fish populations Spisula-solidissima-similis Marine invertebrate larvae Inner continental-shelf Wind-driven estuary Georges bank Vertical-distribution Particle-tracking Bivalve larvae Eastern oyster