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An individual-based model of forest volatile organic compound emissions-UVAFME-VOC v1.0
Published on: 2017
Published by: ECOLOGICAL MODELLING
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Bin Wang, Manuel T Lerdau
Tags

Individual-based model Dynamics ecology patterns carbon North-america Gap models Biogenic emissions Isoprene emission Fraxinus-excelsior Chestnut Uvafme-voc Volatile organic compound Oak American chestnut Forest diversity

Evaluating trap cropping strategies for insect pest control through simulation models
Published on: 2017
Published by: J PEST SCI
Sponsored by: Fondo para la Investigacion Cientifica Tecnologica
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts
Authored by: Maria S Fenoglio, Martin Videla, Juan M Morales
Tags

Individual-based model Management Performance movement ecology patterns systems Liriomyza-huidobrensis Leafminer Preference Hemiptera Herbivores Pest management

Could misreporting of condom use explain the observed association between injectable hormonal contraceptives and HIV acquisition risk
Published on: 2017
Published by: CONTRACEPTION
Sponsored by: Bill and Melinda Gates Foundation
Platforms: MATLAB
Related Files: Paper:
Documentation: Other Narrative
Authored by: Jennifer A Smith, Renee Heffron, Ailsa R Butler, Connie Celum, Jared M Baeten, Timothy B Hallett
Tags

mathematical modelling Infection HIV transmission South-africa Metaanalysis Behaviors Condom use Cohort Discordant couples Womens risk Trial Dmpa Injectable hormonal contraceptives Misreporting bias

Biological and economic vulnerabilities of fixed TACs in small pelagics: An analysis of the European anchovy (Engraulis encrasicolus) in the Gulf of Cadiz
Published on: 2017
Published by: MARINE POLICY
Sponsored by: European Union
Platforms: MATLAB
Related Files: Code: Paper:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: Javier Ruiz, Rincon Margarita Maria, David Castilla, Fernando Ramos, del Hoyo Juan Jose Garcia
Tags

Individual-based model Management fisheries growth Estuary Early-life stages L. Sw spain Spatiotemporal distribution Environmental variables Bioeconomic model Adaptive tac Engraulis encrasicolus European anchovy Small pelagics Ices subdivision ixa Spatiotemporal distribution

Individual-based energetic model suggests bottom up mechanisms for the impact of coastal hypoxia on Pacific harbor seal (Phoca vitulina richardii) foraging behavior
Published on: 2017
Published by: Journal of Theoretical Biology
Sponsored by: Unknown
Platforms: STELLA
Related Files: Paper:
Documentation: Other Narrative
Authored by: Sheanna Steingass, Markus Horning
Tags

Ecosystem Oregon Gulf-of-mexico Foraging success Vertical-distribution California current system Progressive hypoxia Ammodytes-tobianus Diving behavior Demersal fishes Lesser sandeel Northern gulf English sole Upwelling Conceptual model

Forecasting the new case detection rate of leprosy in four states of Brazil: A comparison of modelling approaches
Published on: 2017
Published by: EPIDEMICS-NETH
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: David J Blok, Vlas Sake J de, Travis C Porco, Jan Hendrik Richardus, Ronald E Crump, Ram Sundaresh, Martial Ndeffo-Mbah, Alison P Galvani, Graham F Medley
Tags

Individual-based model Infection Model comparison Brazil transmission Interventions Contacts Risk-factors Back-calculation Amazon region Forecast Leprosy Lmer Compartmental

Combining modelling tools to evaluate a goose management scheme
Published on: 2017
Published by: AMBIO
Sponsored by: Norwegian Research Council (NRF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Jesper Madsen, Johannes M Baveco, Anne-Kari Bergjord, Jarle W Bjerke, Magda E Chudzinska, Loic Pellissier, Caroline E Simonsen, Ingunn M Tombre, Bart A Nolet
Tags

Individual-based model Scotland Populations Winter Pink-footed geese Spring migration Habitat choice Central norway Components Grassland Goose-agriculture conflict Pink-footed goose Refuge areas Resource depletion model Species distribution model Yield loss

Fish behaviour effects on the accuracy and precision of underwater visual census surveys. A virtual ecologist approach using an individual-based model
Published on: 2017
Published by: ECOLOGICAL MODELLING
Sponsored by: Portuguese Foundation for Science and Technology (FCT)
Platforms: NetLogo
Related Files: Code: Paper:
Documentation: ODD Flow charts Mathematical description
Authored by: Miguel Pessanha Pais, Henrique N Cabral
Tags

Marine protected areas Density Populations Variability Agent-based model Assemblages Communities Abundance Fish behavior Reef fishes Transect Detectability Fishcensus Sampling bias Underwater visual census Sampling methods

How patch size and refuge availability change interaction strength and population dynamics: a combined individual- and population-based modeling experiment
Published on: 2017
Published by: PEERJ
Sponsored by: German Research Foundation (Deutsche Forschungsgemeinschaft, DFG)
Platforms: C++
Related Files: Code: Paper:
Documentation: ODD Flow charts Mathematical description
Authored by: Yuanheng Li, Ulrich Brose, Katrin Meyer, Bjoern C Rall
Tags

Spatial heterogeneity Population dynamics food web Model Individual-based stability Temperature Extinction Functional-response Patch size Habitat loss Interaction strength Feeding rates Food-web dynamics Dependent foraging efficiency Predator-prey interaction Body-mass constraints Real ecosystems Functional response Habitat complexity Ordinary differential equation

Assessing the interruption of the transmission of human helminths with mass drug administration alone: optimizing the design of cluster randomized trials
Published on: 2017
Published by: PARASITES & VECTORS
Sponsored by: Bill and Melinda Gates Foundation
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: Roy Anderson, Sam Farrell, Hugo Turner, Judd Walson, Christl A Donnelly, James Truscott
Tags

Infections Chemotherapy Population-dynamics Impact Mathematical-models Programs Soil-transmitted helminths Schistosomes Parasites Interrupting transmission Cluster randomized trial design Stochastic models of transmission Mass drug administration impact