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Individual-based models for stage structured populations: formulation of "no regression" development equations
Published on: 2010
Published by: JOURNAL OF MATHEMATICAL BIOLOGY
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Sara Pasquali, Giuseppe Buffoni
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Dynamics invasion growth Size Survival Stochastic-model At-age variability

Bacteria can form interconnected microcolonies when a self-excreted product reduces their surface motility: evidence from individual-based model simulations
Published on: 2010
Published by: THEOR BIOSCI
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: ODD Mathematical description
Authored by: Guillaume Deffuant, Nabil Mabrouk, Tim Tolker-Nielsen, Claude Lobry
Tags

ecology growth Protocol Involvement Microbial biofilms Iv pili Multicellular structures Cellular-automaton approach Pseudomonas-aeruginosa biofilms Extracellular dna

Modeling epidemics dynamics on heterogenous networks
Published on: 2010
Published by: Journal of Theoretical Biology
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Yossi Ben-Zion, Yahel Cohen, Nadav M Shnerb
Tags

Dispersal systems Transportation network Reaction-diffusion processes Metapopulation models

Toxicokinetic-toxicodynamic modelling in an individual based context-Consequences of parameter variability
Published on: 2010
Published by: ECOLOGICAL MODELLING
Sponsored by: Swiss National Science Foundation (SNSF)
Platforms: swiss national science foundation
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Documentation: Other Narrative Mathematical description
Authored by: Roman Ashauer
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Dynamics Pesticides exposure Invertebrates

Evaluation of Habitat Quality for Stream Salmonids Based on a Bioenergetics Model
Published on: 2010
Published by: T AM FISH SOC
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Hirokazu Urabe, Miyuki Nakajima, Mitsuru Torao, Tomoya Aoyama
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Individual-based model Atlantic salmon Juvenile steelhead trout Trout oncorhynchus-clarki Cutthroat trout Rainbow-trout Drift-feeding salmonids White-spotted charr Masu salmon Northern japan

EVOLUTIONARY FEEDBACKS BETWEEN REPRODUCTIVE MODE AND MUTATION RATE EXACERBATE THE PARADOX OF SEX
Published on: 2010
Published by: EVOLUTION
Sponsored by: Unknown
Platforms: R
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Daniel B Sloan, Vijay G Panjeti
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Maintenance Escherichia-coli Consequences Cost Deleterious mutations Advantage Recombination Selection balance Replication fidelity Asexual populations

How to build and use individual-based models (IBMs) as hypothesis testing tools
Published on: 2010
Published by: J MARINE SYST
Sponsored by: National Science and Engineering Research Council of Canada (NSERC) Fisheries and Oceans Canada (DFO) Mathematics of Information Technology and Complex Systems (MITACS)
Platforms: MATLAB
Related Files: Paper:
Documentation: Other Narrative Flow charts Pseudocode Mathematical description
Authored by: P Pepin, W C Gentleman, A B Neuheimer, E J H Head
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Population-dynamics Ecosystem model Georges bank Cod gadus-morhua North-atlantic Calanus-finmarchicus Egg-production Larval fish Circulation model Jgofs station

The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses
Published on: 2010
Published by: PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Sponsored by: French National Research Agency (ANR)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Daniel T Haydon, Gael Thebaud, Joel Chadoeuf, Marco J Morelli, John W McCauley
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Evolution fitness Rates Fidelity Translation Type-1 Genome Nucleotide substitutions Poliovirus rna Mutants

An Integrated Modeling Environment to Study the Coevolution of Networks, Individual Behavior, and Epidemics
Published on: 2010
Published by: AI MAGAZINE
Sponsored by: United States National Institutes of Health (NIH) United States National Science Foundation (NSF)
Platforms: Unknown
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Documentation: Other Narrative Flow charts Pseudocode
Authored by: Madhav Marathe, Keith Bisset, Achla Marathe, Chris Barrett, Jonathan Leidig
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Influenza

A New Approach in Modelling the Flocs from Biological Wastewater Treatment Bioreactors
Published on: 2010
Published by: REVISTA DE CHIMIE
Sponsored by: Unknown
Platforms: Unknown
Related Files:
Documentation: Other Narrative Mathematical description
Authored by: Vasile Lavric, Alexandru Rares Popescu
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Simulation bacteria Detachment Biofilm model Nitrification Dissolved-oxygen Activated-sludge flocs