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Growth of cockles (Cerastoderma edule) in the Oosterschelde described by a Dynamic Energy Budget model
Published on: 2011
Published by: J SEA RES
Sponsored by: Dutch Ministries
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Johannes W M Wijsman, Aad C Smaal
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individual-based models Culture Stock Estuary Shellfish Marine Crassostrea-gigas Sw netherlands Pacific oyster Mussels

Techniques for analysing pattern formation in populations of stem cells and their progeny
Published on: 2011
Published by: BMC BIOINFORMATICS
Sponsored by: Unknown
Platforms: C
Related Files: Code: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Helen M Byrne, John A Fozard, Glen R Kirkham, Lee D K Buttery, John R King, Oliver E Jensen
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lateral inhibition Dynamics Extracellular-matrix Systems biology Fate Osteogenic differentiation Lineage-commitment Gradient formation Mesenchymal cells Vertebrate limb

A Simulation Model of Biofilms with Autonomous Cells, 2-Explicit Representation of the Extracellular Polymeric Substance
Published on: 2011
Published by: MACROMOLECULAR THEORY AND SIMULATIONS
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Yu-Guo Tao, Gary W Slater
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Mathematical-model Involvement Individual-based model Cellular-automaton approach Detachment Hypothesis Eps Bacterial colony growth Membranes Dimensions

Truncated Levy flights and agenda-based mobility are useful for the assessment of personal human exposure
Published on: 2011
Published by: ENVIRON POLLUT
Sponsored by: European Union
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Uwe Schlink, Ad M J Ragas
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Simulation models movement patterns Air-pollution Seasonal cycle Search strategies Volatile organic-compounds Urban area Apartments

Escherichia coli O157 infection on Scottish cattle farms: dynamics and control
Published on: 2011
Published by: JOURNAL OF THE ROYAL SOCIETY INTERFACE
Sponsored by: Wellcome Trust
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Mark E J Woolhouse, Xu-Sheng Zhang
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movements Model Prevalence Strategies Vaccine Food Pathogens Herd Iii secreted proteins Beef-cattle

GeneTraMP, a spatio-temporal model of the dispersal and persistence of transgenes in feral, volunteer and crop plants of oilseed rape and related species
Published on: 2011
Published by: ECOL INDIC
Sponsored by: German Federal Ministry of Education and Research (BMBF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts
Authored by: Broder Breckling, Hauke Reuter, Ulrike Middelhoff
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individual-based models Pollination Populations Mediated gene flow Brassica-napus l. Pollen-dispersal Herbicide resistance Commercial fields Outcrossing rate Long-distance

Importance of fish behaviour in modelling conservation problems: food limitation as an example
Published on: 2011
Published by: J FISH BIOL
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Steven F Railsback, Bret C Harvey
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Individual-based model selection Rules Ecological communities Rainbow-trout Salmon Availability

Supply network topology and robustness against disruptions - an investigation using multi-agent model
Published on: 2011
Published by: INTERNATIONAL JOURNAL OF PRODUCTION RESEARCH
Sponsored by: Unknown
Platforms: NetLogo
Related Files: Paper:
Documentation: Other Narrative
Authored by: Anand Nair, Jose M. Vidal
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Agent-based model Scale-Free Networks Supply Networks robustness binomial logistics regression disruptions random networks topology

Theoretical Perspectives on the Statics and Dynamics of Species' Borders in Patchy Environments
Published on: 2011
Published by: AMERICAN NATURALIST
Sponsored by: United States National Institutes of Health (NIH) United States National Science Foundation (NSF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Michael Barfield, Robert D Holt
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Climate-change Natural-selection Gene flow Local adaptation Interspecific competition Ecological consequences Black-hole sink Individual-based simulations Geographic range limits Niche evolution

Modelling the evolutionary effects of a coastal marine reserve on different ecological guilds of fish
Published on: 2011
Published by: JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM
Sponsored by: European Union
Platforms: C++
Related Files: Paper:
Documentation: Other Narrative Flow charts
Authored by: Calvin Dytham, Tanja Miethe, Jonathan W Pitchford
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Individual-based model Cod gadus-morhua Atlantic cod Site fidelity Brook charr Fisheries-induced evolution Life-histories Plaice pleuronectes-platessa Protected areas Harvested fish