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Resolving frontal structures: on the payoff using a less diffusive but computationally more expensive advection scheme
Published on: 2012
Published by: DTSCH HYDROGRAPHISCH
Sponsored by: European Union Norwegian Research Council (NRF) International Council of the Exploration of the Sea (ICES)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Ute Daewel, Corinna Schrum, Knut Barthel, Dhanya Pushpadas, Marius Arthun, Henning Wehde
Tags

individual-based models Water Ecosystem model Environmental variability Marginal ice-zone Southern north-sea Baltic sea Barents sea Hyperbolic conservation-laws High-resolution schemes

Integrating Intracellular Dynamics Using CompuCell3D and Bionetsolver: Applications to Multiscale Modelling of Cancer Cell Growth and Invasion
Published on: 2012
Published by: PLOS ONE
Sponsored by: European Research Council (ERC)
Platforms: Python
Related Files: Paper:
Documentation: Other Narrative Pseudocode Mathematical description
Authored by: Mark A J Chaplain, Vivi Andasari, Ryan T Roper, Maciej H Swat
Tags

Simulation Angiogenesis environment patterns Mathematical-model Expansion Phenotypes Beta-catenin expression Avascular tumor-growth Driven

Using a Data-Constrained Model of Home Range Establishment to Predict Abundance in Spatially Heterogeneous Habitats
Published on: 2012
Published by: PLOS ONE
Sponsored by: National Science and Engineering Research Council of Canada (NSERC) Ministries of Ontario Forestry Futures Trust Sustainable Forest Management Network
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: John P Caspersen, Mark C Vanderwel, Jay R Malcolm
Tags

Dynamics selection patterns forests Populations Resources Responses Small mammals Green-tree retention Dominated boreal mixedwoods

Selective consequences of catastrophes for growth rates in a stream-dwelling salmonid
Published on: 2012
Published by: Oecologia
Sponsored by: United States National Oceanic and Atmospheric Administration (NOAA) Fisheries Ecology Division
Platforms: Unknown
Related Files: Paper:
Documentation: ODD Flow charts Mathematical description
Authored by: Jarl Giske, Simone Vincenzi, Marc Mangel, Alain J Crivelli, William H Satterthwaite
Tags

Atlantic salmon Population-dynamics Brown trout Density-dependence Natural-populations Phenotypic selection Dependent individual growth Marble trout Variable environments Desert stream

Life history and biogeography of Calanus copepods in the Arctic Ocean: An individual-based modeling study
Published on: 2012
Published by: PROG OCEANOGR
Sponsored by: Shanghai Ocean University
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Rubao Ji, Cabell S Davis, Changsheng Chen, Robert C Beardsley, Robert G Campbell, Carin J Ashjian, Geoffrey W Cowles, Guoping Gao
Tags

Egg-production Grazing impact Northern bering-sea Barents sea Fram strait Zooplankton distribution Population development Greenland sea Chukchi sea Food-chain

Simulations of the social organization of large schools of fish whose perception is obstructed
Published on: 2012
Published by: APPL ANIM BEHAV SCI
Sponsored by: Rosalind Franklin Fellowship
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Charlotte Hemelrijk, Hanspeter Kunz
Tags

behavior Dynamics movement patterns Model Animal groups Density Size Shape Multibeam sonar

Protective immunity to Schistosoma haematobium infection is primarily an anti-fecundity response stimulated by the death of adult worms
Published on: 2012
Published by: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Sponsored by: Wellcome Trust Australian National Health and Medical Research Council (NHMRC)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts
Authored by: Kate M Mitchell, Francisca Mutapi, Nicholas J Savill, Mark E J Woolhouse
Tags

Epidemiology patterns Aggregation Chemotherapy Recognition Age Mansoni Praziquantel Intensity Profiles

Simulating natural selection in landscape genetics
Published on: 2012
Published by: MOLECULAR ECOLOGY RESOURCES
Sponsored by: United States Department of Agriculture (USDA) Rocky Mountain Research Station U.S. Department of Agriculture Forest Service
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: S A Cushman, E L Landguth, N A Johnson
Tags

Adaptation Evolution speciation perspective dominance Rates Populations Mosaic hybrid zone Haldanes rule Mitochondrial

Consistent waves of collective vigilance in groups using public information about predation risk
Published on: 2012
Published by: BEHAV ECOL
Sponsored by: Spanish Ministries
Platforms: Repast Java
Related Files: Paper:
Documentation: ODD Mathematical description
Authored by: Peter Alexander, Roger Jovani, Guy Beauchamp
Tags

behavior models birds social information Prey Neighbors Group-size Synchrony Flocks Antipredatory vigilance

Simulating population recovery of an aquatic isopod: Effects of timing of stress and landscape structure
Published on: 2012
Published by: ENVIRON POLLUT
Sponsored by: Syngenta Bayer CropScience
Platforms: R
Related Files: Paper:
Documentation: ODD Pseudocode Mathematical description
Authored by: Pernille Thorbek, Nika Galic, Hans Baveco, Eric Bruns, den Brink Paul J Van, Geerten M Hengeveld
Tags

Water growth Colonization Risk-assessment Life-history Ecological theory Asellus-aquaticus Lotic ecosystems Disturbance regimes Headwater stream