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When Demography Met Social Simulation: A Tale of Two Modelling Approaches
Published on: 2013-10
Published by: J ARTIFICIAL SOC SOC
Sponsored by: United Kingdom Engineering and Physical Sciences Research Council (EPSRC)
Platforms: Repast
Related Files: Code:
Documentation: Other Narrative Pseudocode
Authored by: Jason Noble
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Health Care Demography Complexity Science Scenario Generation

Evolving Greenhouses: An Agent-Based Model of Universal Darwinism in Greenhouse Horticulture
Published on: 2013-10
Published by: J ARTIFICIAL SOC SOC
Sponsored by: European Union Duurzame Greenport Westland-Oostland Task Force
Platforms: NetLogo
Related Files: Code:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: J. Kasmire, Gerard Dijkema
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Evolution Complex adaptive systems Innovation Greenhouse Horticulture Universal Darwinism

Noise propagation through extracellular signaling leads to fluctuations in gene expression
Published on: 2013-09-25
Published by: BMC SYSTEMS BIOLOGY
Sponsored by: United States National Institutes of Health (NIH)
Platforms: C++
Related Files: Paper:
Documentation: Other Narrative
Authored by: Ciriyam Jayaprakash, Omar P. Tabbaa, German Nudelman, Stuart C. Sealfon, Fernand Hayot
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Spatial heterogeneity Dendritic cells Cytokine signaling Multi-scale modeling Noise propagation

A test of agent-based models as a tool for predicting patterns of pathogen transmission in complex landscapes
Published on: 2013-09-25
Published by: BMC ECOLOGY
Sponsored by: United States National Science Foundation (NSF)
Platforms: Repast
Related Files: Paper:
Documentation: ODD Pseudocode
Authored by: S. M. Niaz Arifin, Gregory R. Madey, Kelly E. Lane-deGraaf, Ryan C. Kennedy, Agustin Fuentes, Hope Hollocher
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Agent-based model GIS Dispersal Landscape heterogeneity Pathogen transmission

Spin models as microfoundation of macroscopic market models
Published on: 2013-09-15
Published by: PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Sebastian M. Krause, Stefan Bornholdt
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Agent based models econophysics financial markets Ising model Macroscopic market models Microfoundation

Stochastic Simulation of Endemic Salmonella enterica Serovar Typhi: The Importance of Long Lasting Immunity and the Carrier State
Published on: 2013-09-10
Published by: PLOS ONE
Sponsored by: European Union Novartis Swiss Tropical and Public Health Institute
Platforms: Delphi
Related Files: Paper:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: Allan Saul, Tom Smith, Nicolas Maire
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A biomechanical model of wound contraction and scar formation
Published on: 2013-09-07
Published by: Journal of Theoretical Biology
Sponsored by: Unknown
Platforms: Unknown
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Documentation: Other Narrative Flow charts Mathematical description
Authored by: Le Yang, Tarynn M. Witten, Ramana M. Pidaparti
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Collagen alignment Fiber-reinforced anisotropic soft tissue finite element method

Exploring Agricultural Livelihood Transitions with an Agent-Based Virtual Laboratory: Global Forces to Local Decision-Making
Published on: 2013-09-05
Published by: PLOS ONE
Sponsored by: United States National Science Foundation (NSF)
Platforms: MATLAB
Related Files: Paper:
Documentation: ODD Pseudocode Mathematical description
Authored by: Nicolas R Magliocca, Erle C. Ellis
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Predictive Computational Modeling of the Mucosal Immune Responses during Helicobacter pylori Infection
Published on: 2013-09-05
Published by: PLOS ONE
Sponsored by: United States National Institutes of Health (NIH)
Platforms: ENISI
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Stephen Eubank, Adria Carbo, Josep Bassaganya-Riera, Mireia Pedragosa, Monica Viladomiu, Madhav Marathe, Katherine Wendelsdorf, Keith Bisset, Stefan Hoops, Xinwei Deng, Maksudul Alam, Barbara Kronsteiner, Yongguo Mei, Raquel Hontecillas
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Modeling biological tissue growth: Discrete to continuum representations
Published on: 2013-09-04
Published by: PHYSICAL REVIEW E
Sponsored by: Australian Research Council (ARC)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Kerry A Landman, Jack D. Hywood
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