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A computational tool integrating host immunity with antibiotic dynamics to study tuberculosis treatment
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: Bill and Melinda Gates Foundation United States National Institutes of Health (NIH) United States Department of Energy (DOE) United States National Science Foundation (NSF)
Platforms: C++
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Denise E Kirschner, Nicholas A Cilfone, Jennifer J Linderman, Elsje Pienaar, Philana Ling Lin, Veronique Dartois, Joshua T Mattila, J Russell Butler, JoAnne L Flynn
Tags

Granuloma-formation Aerosol infection model Necrosis-factor-alpha Mycobacterium-tuberculosis Population pharmacokinetics Antituberculosis drugs Cynomolgus macaques Treatment regimens In-vitro Rifampin

Evolution of fairness in the dictator game by multilevel selection
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: United States National Science Foundation (NSF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: Paul E Smaldino, Jeffrey C Schank, Matt L Miller
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Transmission dynamics of oral polio vaccine viruses and vaccine-derived polioviruses on networks
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Jong-Hoon Kim, Seong-Hwan Rho
Tags

Evolution outbreak Eradication Immunity Follow-up Circulation National immunization days Paralytic poliomyelitis Type-1 Poliovaccine

Epidemic control analysis: Designing targeted intervention strategies against epidemics propagated on contact networks
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: United Kingdom Engineering and Physical Sciences Research Council (EPSRC)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Christoforos Hadjichrysanthou, Kieran J Sharkey
Tags

Complex networks Social networks models Small-world networks Internet Centrality Statistical-mechanics Collective dynamics Real networks Betweenness

Modeling intrinsic heterogeneity and growth of cancer cells
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: United States National Institutes of Health (NIH) United States National Science Foundation (NSF) John Simon Guggenheim Memorial Foundation
Platforms: MATLAB
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Doron Levy, James M Greene, King Leung Fung, Paloma S Souza, Michael M Gottesman, Orit Lavi
Tags

Dynamics apoptosis Drug-resistance Multidrug-resistance

The evolution of paternal care can lead to population growth in artificial societies
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: National Commission for Scientific and Technological Research of Chile
Platforms: NetLogo
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Mauricio Salgado
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Cooperation Parental care Group selection Altruism Primates investment Eusociality Mating systems Kin selection Females

Incomplete penetrance: The role of stochasticity in developmental cell colonization
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: Australian Research Council (ARC) Australian National Health and Medical Research Council (NHMRC)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Kerry A Landman, Benjamin J Binder, Donald E Newgreen, Joshua V Ross
Tags

Discordant hirschsprungs-disease Enteric nervous-system Monozygotic twins Neural crest Environmental-factors Modifier genes

Synergy of local, regional, and systemic non-specific stressors for host defense against pathogens
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: Unknown
Platforms: NetLogo
Related Files: Paper:
Documentation: Other Narrative
Authored by: J D Day, E K LeGrand
Tags

Metabolism

An agent-based model of dialect evolution in killer whales
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: European Union
Platforms: MATLAB
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Olga A Filatova, Patrick J O Miller
Tags

Convergence Cultural-evolution Bottle-nosed dolphins Bird song dialects Orcinus-orca Selective attrition Tursiops-truncatus Call Divergence Signatures

Modeling perspectives on echolocation strategies inspired by bats flying in groups
Published on: 2015
Published by: Journal of Theoretical Biology
Sponsored by: United States National Science Foundation (NSF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: Yuan Lin, Nicole Abaid
Tags

Agent-based model behavior Prey Animal groups Big brown bats Eptesicus-fuscus Target-detection Sound beam Flight Pursuit