CoMSES Catalog

Agent-based modelling in applied ethology: An exploratory case study of behavioural dynamics in tail biting in pigs

Published on: 2016

Published by: APPL ANIM BEHAV SCI

Sponsored by: Wageningen IPOP Research Program

Platforms: NetLogo

Related Files: Code: Paper:

Documentation: ODD Flow charts

Authored by: Gert Jan Hofstede, Iris J M M Boumans, Eddie A M Bokkers, Boer Imke J M de, J Elizabeth Bolhuis

Tags

ecology systems Outbreaks Protocol Needs Environmental enrichment Animal-welfare Frequency Damage

Chaos in collective health: Fractal dynamics of social learning

Published on: 2016

Published by: Journal of Theoretical Biology

Sponsored by: Unknown

Platforms: Benoit

Related Files: Paper:

Documentation: Other Narrative

Authored by: Christopher Keane

Tags

Epidemiology Performance networks transmission Vaccination Infectious-diseases Transtheoretical model Behavior-change Hand hygiene Attractors

A hybrid agent-based model of the developing mammary terminal end bud

Published on: 2016

Published by: Journal of Theoretical Biology

Sponsored by: United States National Science Foundation (NSF)

Platforms: C++

Related Files: Paper:

Documentation: Other Narrative Flow charts

Authored by: Zhihui Wang, Vittorio Cristini, Joseph D Butner, Yao-Li Chuang, Eman Simbawa, A S Al-Fhaid, S R Mahmbud

Tags

differentiation Breast-cancer Carcinoma in-situ Estrogen-receptor-alpha Hematopoietic stem-cell Gland development Asymmetric division Ductal morphogenesis Growth-factor Amphiregulin

Truncation selection and payoff distributions applied to the replicator equation

Published on: 2016

Published by: Journal of Theoretical Biology

Sponsored by: Unknown

Platforms: Unknown

Related Files: Paper:

Documentation: Other Narrative Mathematical description

Authored by: Chris T Bauch, B Morsky

Tags

Cooperation graphs Evolutionary stable strategies classification Lotka-Volterra equation stability Natural-selection Game dynamics Finite populations

Simulating the multicellular homeostasis with a cell-based discrete receptor dynamics model: The non-mutational origin of cancer and aging

Published on: 2016

Published by: Journal of Theoretical Biology

Sponsored by: Unknown

Platforms: C++

Related Files: Paper:

Documentation: Other Narrative Flow charts Mathematical description

Authored by: Yu Chen, Yuting Lou

Tags

polarity growth Senescence apoptosis evolutionary Extracellular-matrix Therapy Epithelial acini Cycle arrest Haptotaxis

A spatial model of the efficiency of T cell search in the influenza-infected lung

Published on: 2016

Published by: Journal of Theoretical Biology

Sponsored by: Unknown

Platforms: CyCells

Related Files: Paper:

Documentation: Other Narrative Mathematical description

Authored by: Soumya Banerjee, Melanie Moses, Stephanie Forrest, Drew Levin, Candice Clay, Judy Cannon, Frederick Koster

Tags

Dendritic cells Central-nervous-system A virus-infection Antigen presentation Bronchial epithelial-cells Adaptive immune-response Inflammatory response Chemokine expression Human alveolar Lymph-node

A modelling approach to explore the critical environmental parameters influencing the growth and establishment of the invasive seaweed Undaria pinnatifida in Europe

Published on: 2016

Published by: Journal of Theoretical Biology

Sponsored by: European Union Irish Research Council

Platforms: C++

Related Files: Paper:

Documentation: Other Narrative Flow charts Mathematical description

Authored by: James T Murphy, Mark P Johnson, Frederique Viard

Tags

Macroalgae patterns Australia Impacts Brown alga St-malo Laminariales Phaeophyceae Bay Brittany

T cell and reticular network co-dependence in HIV infection

Published on: 2016

Published by: Journal of Theoretical Biology

Sponsored by: Unknown

Platforms: Unknown

Related Files: Paper:

Documentation: Other Narrative Mathematical description

Authored by: Graham M Donovan, Grant Lythe

Tags

Migration Dynamics Dendritic cells Survival Responses Lymph-node Stromal cells Homeostasis Naive Antigen

Sole larval supply to coastal nurseries: Interannual variability and connectivity at interregional and interpopulation scales

Published on: 2016

Published by: J SEA RES

Sponsored by: European Union

Platforms: Unknown

Related Files: Paper:

Documentation: Other Narrative

Authored by: Pape O Le, M Savina, M Lunghi, B Archambault, L Baulier, M Huret

Tags

Life-history Habitat suitability North-sea Adult-population Eastern english-channel Plaice pleuronectes-platessa Marine fishes Numerical simulations Spawning habitat Dover sole

Sympatric speciation in structureless environments

Published on: 2016

Published by: BMC EVOL BIOL

Sponsored by: Unknown

Platforms: Nova

Related Files: Code: Paper:

Documentation: Other Narrative

Authored by: Wayne M Getz, Richard Salter, Dana Paige Seidel, Hooft Pim van

Tags

Competition Evolution Dynamics sexual selection Mate Choice Empirical-evidence Magic traits Ecological speciation Adaptive radiation Gene flow

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