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A generalized simulation development approach for predicting refugee destinations
Published on: 2017
Published by: SCIENTIFIC REPORTS
Sponsored by: Unknown
Platforms: Python
Related Files: Code: Paper:
Documentation: Other Narrative
Authored by: David Bell, Diana Suleimenova, Derek Groen
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Agent-based model Climate health Africa Challenges Crisis Flows Forced migration

Deletion of TgF-beta 1 increases Bacterial clearance by cytotoxic T cells in a Tuberculosis granuloma Model
Published on: 2017
Published by: FRONTIERS IN IMMUNOLOGY
Sponsored by: United States National Institutes of Health (NIH) United States Department of Energy (DOE)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Flow charts Mathematical description
Authored by: Denise E Kirschner, Jennifer J Linderman, Elsje Pienaar, Joshua T Mattila, Hayley C Warsinske
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Agent-based modeling tuberculosis Immune-response Necrosis-factor-alpha Mycobacterium-tuberculosis Interferon-gamma Growth-factor-beta Tgf-beta Transforming growth-factor-beta-1 Ifn-gamma Cells-t cells Cytotoxic Infections-bacterial Transforming growth factor beta Pulmonary Macrophage activation Identifying mechanisms

Identifying mechanisms driving formation of granuloma-associated fibrosis during Mycobacterium tuberculosis infection
Published on: 2017
Published by: Journal of Theoretical Biology
Sponsored by: United States National Institutes of Health (NIH) United States Department of Energy (DOE) United States National Science Foundation (NSF)
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: Denise E Kirschner, Jennifer J Linderman, JoAnne L Flynn, Hayley C Warsinske, Robert M DiFazio
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Agent-based model Immune-response Necrosis-factor-alpha Growth-factor-beta Tgf-beta Myofibroblast differentiation Idiopathic pulmonary-fibrosis Transforming growth-factor-beta-1 Collagen formation Biological tissue

Analysis of ecological thresholds in a temperate forest undergoing dieback
Published on: 2017
Published by: PLOS ONE
Sponsored by: United Kingdom Natural Environment Research Council (NERC)
Platforms: NetLogo
Related Files: Code: Paper:
Documentation: ODD
Authored by: Philip Martin, Adrian C Newton, Elena Cantarello, Paul M Evans
Tags

Management Dynamics Biodiversity ecosystems resilience Mortality Drought Western united-states Large old trees Tipping points

Effects of pathogen dependency in a multi-pathogen infectious disease system including population level heterogeneity - a simulation study
Published on: 2017
Published by: THEORETICAL BIOLOGY AND MEDICAL MODELLING
Sponsored by: Unknown
Platforms: R
Related Files: Paper:
Documentation: Other Narrative Flow charts
Authored by: Abhishek Bakuli, Frank Klawonn, Andre Karch, Rafael Mikolajczyk
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epidemics Agent based model Households models Epidemic Vaccination influenza transmission Household size Pathogen dependency Multi-pathogen

Simulation of Escherichia coli Dynamics in Biofilms and Submerged Colonies with an Individual-Based Model Including Metabolic Network Information
Published on: 2017
Published by: FRONTIERS IN MICROBIOLOGY
Sponsored by: Flanders Research Foundation Agency for Innovation by Science and Technology in Flanders (IWT)
Platforms: MASON
Related Files: Paper:
Documentation: ODD Mathematical description
Authored by: Ignace L M M Tack, Impe Jan F M Van, Philippe Nimmegeers, Simen Akkermans, Ihab Hashem
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Individual-based modeling environment Multiscale modeling E. coli time Protocol Cell Growth-rate Lag phase Bacterial cultures Metabolomics Biofilm dynamics Food system K-12

Inequality, Redistributive Policies and Multiplier Dynamics in an Agent-based Model with Credit Rationing
Published on: 2017
Published by: ITAL ECON J
Sponsored by: European Union
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Andrea Roventini, Mauro Napoletano, Elisa Palagi, Jean-Luc Gaffard
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Agent-based models Financial fragility Income inequality Fiscal multipliers Redistributive policies Credit-rationing

A coupled modeling framework for sustainable watershed management in transboundary river basins
Published on: 2017
Published by: HYDROLOGY AND EARTH SYSTEM SCIENCES
Sponsored by: Unknown
Platforms: R
Related Files: Code: Paper:
Documentation: Other Narrative Flow charts
Authored by: Hassaan Furqan Khan, Y C Ethan Yang, Hua Xie, Claudia Ringler
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Agriculture Climate Hydrology Land-use Optimization Impact Natural systems Resources Mekong Hydropower

How costly punishment, diversity, and density of connectivity influence cooperation in a biological network
Published on: 2017
Published by: SCIENTIFIC REPORTS
Sponsored by: Unknown
Platforms: Python
Related Files: Code: Paper:
Documentation: Other Narrative Mathematical description
Authored by: Ivan C Ezeigbo
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Evolution emergence Humans games Prisoners-dilemma Rare Promote

Emergence of cooperation in a coupled socio-ecological system through a direct or an indirect social control mechanism
Published on: 2017
Published by: JOURNAL OF PHYSICS COMMUNICATIONS
Sponsored by: Unknown
Platforms: Unknown
Related Files: Paper:
Documentation: Other Narrative
Authored by: H S Sugiarto, N N Chung, C H Lai, L Y Chew
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Agent-based modeling behavior statistical physics Norms Community Model Punishment Humans Resource-management Computer Social cooperation Nonlinear dynamics Coupled social-ecological system Complexnetwork Phase transition Ostracism Enforcement