The Power to Detect Recent Fragmentation Events Using Genetic Differentiation Methods

Authored by Michael W Lloyd, Lesley Campbell, Maile C Neel

Date Published: 2013

DOI: 10.1371/journal.pone.0063981

Sponsors: No sponsors listed

Platforms: No platforms listed

Model Documentation: Other Narrative

Model Code URLs: Model code not found

Abstract

Habitat loss and fragmentation are imminent threats to biological diversity worldwide and thus are fundamental issues in conservation biology. Increased isolation alone has been implicated as a driver of negative impacts in populations associated with fragmented landscapes. Genetic monitoring and the use of measures of genetic divergence have been proposed as means to detect changes in landscape connectivity. Our goal was to evaluate the sensitivity of Wright's F-st, Hedrick' G'(st), Sherwin's MI, and Jost's D to recent fragmentation events across a range of population sizes and sampling regimes. We constructed an individual-based model, which used a factorial design to compare effects of varying population size, presence or absence of overlapping generations, and presence or absence of population sub-structuring. Increases in population size, overlapping generations, and population sub-structuring each reduced F-st, G'(st), MI, and D. The signal of fragmentation was detected within two generations for all metrics. However, the magnitude of the change in each was small in all cases, and when Ne was >100 individuals it was extremely small. Multi-generational sampling and population estimates are required to differentiate the signal of background divergence from changes in F-st, G'(st), MI, and D associated with fragmentation. Finally, the window during which rapid change in F-st, G'(st), MI, and D between generations occurs can be small, and if missed would lead to inconclusive results. For these reasons, use of F-st, G'(st), MI, or D for detecting and monitoring changes in connectivity is likely to prove difficult in real-world scenarios. We advocate use of genetic monitoring only in conjunction with estimates of actual movement among patches such that one could compare current movement with the genetic signature of past movement to determine there has been a change.

Tags

F-ST Landscape connectivity Patch size Endemic astragalus-bibullatus Effective population-size Habitat fragmentation Seed bank Forest fragmentation Conservation genetics Pogogyne-abramsii