Agent-based model of angiogenesis simulates capillary sprout initiation in multicellular networks

Authored by J Walpole, J C Chappell, J G Cluceru, Gabhann F Mac, V L Bautch, S M Peirce

Date Published: 2015

DOI: 10.1039/c5ib00024f

Sponsors: Alfred P. Sloan Foundation United States National Institutes of Health (NIH) United States National Science Foundation (NSF)

Platforms: NetLogo

Model Documentation: Other Narrative Flow charts

Model Code URLs: Model code not found

Abstract

Many biological processes are controlled by both deterministic and stochastic influences. However, efforts to model these systems often rely on either purely stochastic or purely rule-based methods. To better understand the balance between stochasticity and determinism in biological processes a computational approach that incorporates both influences may afford additional insight into underlying biological mechanisms that give rise to emergent system properties. We apply a combined approach to the simulation and study of angiogenesis, the growth of new blood vessels from existing networks. This complex multicellular process begins with selection of an initiating endothelial cell, or tip cell, which sprouts from the parent vessels in response to stimulation by exogenous cues. We have constructed an agent-based model of sprouting angiogenesis to evaluate endothelial cell sprout initiation frequency and location, and we have experimentally validated it using high-resolution time-lapse confocal microscopy. ABM simulations were then compared to a Monte Carlo model, revealing that purely stochastic simulations could not generate sprout locations as accurately as the rule-informed agent-based model. These findings support the use of rule-based approaches for modeling the complex mechanisms underlying sprouting angiogenesis over purely stochastic methods.

Tags

Notch cell migration cancer In-vitro Endothelial-growth-factor Laser-scanning microscopy Diabetic-retinopathy Gene-expression Tumor angiogenesis Vegf