Individual-based modelling of population growth and diffusion in discrete time

Authored by Natalie Tkachenko, John D Weissmann, Wesley P Petersen, George Lake, Christoph P E Zollikofer, Simone Callegari

Date Published: 2017

DOI: 10.1371/journal.pone.0176101

Sponsors: No sponsors listed

Platforms: Python

Model Documentation: Other Narrative Flow charts Mathematical description

Model Code URLs: https://github.com/uzh/QHG

Abstract

Individual-based models (IBMs) of human populations capture spatio-temporal dynamics using rules that govern the birth, behavior, and death of individuals. We explore a stochastic IBM of logistic growth-diffusion with constant time steps and independent, simultaneous actions of birth, death, and movement that approaches the Fisher-Kolmogorov model in the continuum limit. This model is well-suited to parallelization on high-performance computers. We explore its emergent properties with analytical approximations and numerical simulations in parameter ranges relevant to human population dynamics and ecology, and reproduce continuous-time results in the limit of small transition probabilities. Our model prediction indicates that the population density and dispersal speed are affected by fluctuations in the number of individuals. The discrete-time model displays novel properties owing to the binomial character of the fluctuations: in certain regimes of the growth model, a decrease in time step size drives the system away from the continuum limit. These effects are especially important at local population sizes of <50 individuals, which largely correspond to group sizes of hunter-gatherers. As an application scenario, we model the late Pleistocene dispersal of Homo sapiens into the Americas, and discuss the agreement of model-based estimates of first-arrival dates with archaeological dates in dependence of IBM model parameter settings.

Tags

Evolution Dynamics ecology invasion foraging patterns Humans Front Hunter-gatherers America