Hierarchical Nonlinear Spatio-temporal Agent-Based Models for Collective Animal Movement

Authored by Patrick L McDermott, Christopher K Wikle, Joshua Millspaugh

Date Published: 2017

DOI: 10.1007/s13253-017-0289-2

Sponsors: No sponsors listed

Platforms: No platforms listed

Model Documentation: Other Narrative Mathematical description

Model Code URLs: Model code not found

Abstract

Modeling complex collective animal movement presents distinct challenges. In particular, modeling the interactions between animals and the nonlinear behaviors associated with these interactions, while accounting for uncertainty in data, model, and parameters, requires a flexible modeling framework. To address these challenges, we propose a general hierarchical framework for modeling collective movement behavior with multiple stages. Each of these stages can be thought of as processes that are flexible enough to model a variety of complex behaviors. For example, self-propelled particle (SPP) models (e.g., Vicsek et al. in Phys Rev Lett 75:1226-1229, 1995) represent collective behavior and are often applied in the physics and biology literature. To date, the study and application of these models has almost exclusively focused on simulation studies, with less attention given to rigorously quantifying the uncertainty. Here, we demonstrate our general framework with a hierarchical version of the SPP model applied to collective animal movement. This structure allows us to make inference on potential covariates (e.g., habitat) that describe the behavior of agents and rigorously quantify uncertainty. Further, this framework allows for the discrete time prediction of animal locations in the presence of missing observations. Due to the computational challenges associated with the proposed model, we develop an approximate Bayesian computation algorithm for estimation. We illustrate the hierarchical SPP methodology with a simulation study and by modeling the movement of guppies. Supplementary materials accompanying this paper appear online.

Tags

Agent-based models statistics Algorithm Inference Approximate bayesian computation Chain monte-carlo Collective movement Hierarchical model Nonlinear modeling Self-propelled particle model