Reactions, diffusion, and volume exclusion in a conserved system of interacting particles

Authored by Helen Byrne, Daniel B Wilson, Maria Bruna

Date Published: 2018

DOI: 10.1103/physreve.97.062137

Sponsors: United Kingdom Engineering and Physical Sciences Research Council (EPSRC)

Platforms: No platforms listed

Model Documentation: Other Narrative Mathematical description

Model Code URLs: Model code not found

Abstract

Complex biological and physical transport processes are often described through systems of interacting particles. The effect of excluded volume on these transport processes has been well studied; however, the interplay between volume exclusion and reactions between heterogenous particles is less well studied. In this paper we develop a framework for modeling reaction-diffusion processes which directly incorporates volume exclusion. We consider simple reactions (unimolecular and bimolecular) that conserve the total number of particles. From an off-lattice microscopic individual-based model we use the Fokker-Planck equation and the method of matched asymptotic expansions to derive a low-dimensional macroscopic system of nonlinear partial differential equations describing the evolution of the particles. A biologically motivated, hybrid model of chemotaxis with volume exclusion is explored, where reactions occur at rates dependent upon the chemotactic environment. Further, we show that for reactions that require particle contact the appropriate reaction term in the macroscopic model is of lower order in the asymptotic expansion than the nonlinear diffusion term. However, we find that the next reaction term in the expansion is needed to ensure good agreement with simulations of the microscopic model. Our macroscopic model allows for more direct parametrization to experimental data than existing models.

Tags

Simulation Model Mechanisms Physics Macrophages Cell-migration