Exploring scenarios of chikungunya mitigation with a data-driven agent-based model of the 2014-2016 outbreak in Colombia

Authored by John Grefenstette, Guido Espana, Alex Perkins, Claudia Torres, Carey Alfonso Campo, Hernando Diaz, la Hoz Fernando de, Donald S Burke, Panhuis Willem G van

Date Published: 2018

DOI: 10.1038/s41598-018-30647-8

Sponsors: Bill and Melinda Gates Foundation United States National Institutes of Health (NIH) United States National Science Foundation (NSF)

Platforms: C++

Model Documentation: Other Narrative Flow charts

Model Code URLs: https://github.com/PublicHealthDynamicsLab/FRED

Abstract

New epidemics of infectious diseases can emerge any time, as illustrated by the emergence of chikungunya virus (CHIKV) and Zika virus (ZIKV) in Latin America. During new epidemics, public health officials face difficult decisions regarding spatial targeting of interventions to optimally allocate limited resources. We used a large-scale, data-driven, agent-based simulation model (ABM) to explore CHIKV mitigation strategies, including strategies based on previous DENV outbreaks. Our model represents CHIKV transmission in a realistic population of Colombia with 45 million individuals in 10.6 million households, schools, and workplaces. Our model uses high-resolution probability maps for the occurrence of the Ae. aegypti mosquito vector to estimate mosquito density in Colombia. We found that vector control in all 521 municipalities with mosquito populations led to 402,940 fewer clinical cases of CHIKV compared to a baseline scenario without intervention. We also explored using data about previous dengue virus (DENV) epidemics to inform CHIKV mitigation strategies. Compared to the baseline scenario, 314,437 fewer cases occurred when we simulated vector control only in 301 municipalities that had previously reported DENV, illustrating the value of available data from previous outbreaks. When varying the implementation parameters for vector control, we found that faster implementation and scale-up of vector control led to the greatest proportionate reduction in cases. Using available data for epidemic simulations can strengthen decision making against new epidemic threats.
Tags
Epidemic transmission Strategies Aedes-aegypti Interventions Infectious-disease Lessons Ebola Dengue Zika virus