Multi-cell agent-based simulation of the microvasculature to study the dynamics of circulating inflammatory cell trafficking
Authored by Alexander M. Bailey, Bryan C. Thorne, Shayn M. Peirce
Date Published: 2007-06
DOI: 10.1007/s10439-007-9266-1
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Platforms:
NetLogo
MATLAB
Model Documentation:
Other Narrative
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Mathematical description
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Abstract
Leukocyte trafficking through the microcirculation and into tissues is central in angiogenesis, inflammation, and the immune response. Although the literature is rich with mechanistic detail describing molecular mediators of these processes, integration of signaling events and cell behaviors within a uni. ed spatial and temporal framework at the multicell tissue-level is needed to achieve a fuller understanding. We have developed a novel computational framework that combines agent-based modeling (ABM) with a network. ow analysis to study monocyte homing. A microvascular network architecture derived from mouse muscle was incorporated into the ABM. Each individual cell was represented by an individual agent in the simulation. The network. ow model calculates hemodynamic parameters (blood flow rates, fluid shear stress, and hydrostatic pressures) throughout the simulated microvascular network. These are incorporated into the ABM to affect monocyte transit through the network and chemokine/cytokine concentrations. In turn, simulated monocytes respond to their local mechanical and biochemical environments and make behavioral decisions based on a rule set derived from independent literature. Simulated cell behaviors give rise to emergent leukocyte rolling, adhesion, and extravasation. Molecular knockout simulations were performed to validate the model, and predictions of monocyte adhesion, rolling, and extravasation show good agreement with the independently published corresponding mouse studies.
Tags
Agent-based model
inflammation
leukocyte adhesion
microcirculation
monocyte
network flow model